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Following is an example of a basic PBS script for running an MPI job. Each line that begins with #PBS is a PBS directive. Customize this and other sample scripts by substituting your own job name, project code, queue specification, email address, and so on where indicated. #! /bin/tcsh ### bash users replace /tcsh with /bash -l #PBS -N job_name #PBS -A project_code #PBS -l walltime=01:00:00 #PBS -q queue_name #PBS -j oe #PBS -k eod #PBS -m abe #PBS -M your_email_address #PBS -l select=2:ncpus=36:mpiprocs=36 ### Set TMPDIR as recommended setenv TMPDIR /glade/scratch/$USER/temp ### bash users: export TMPDIR=/glade/scratch/$USER/temp mkdir -p $TMPDIR ### Run the executable mpiexec_mpt. / The select statement directive in the example indicates that the job requires: 2 chunks of resources (on non-shared Cheyenne queues, this is 2 nodes) 36 cores or individual processors (ncpus=36) on each node 36 MPI processes (mpiprocs=36) on each node. CISL recommends that users set TMPDIR when running batch jobs on the Cheyenne compute nodes, as explained here: Storing temporary files with TMPDIR.
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